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1

Multiple Global Conformational States of the Hexameric RepA Helicase of Plasmid RSF1010 with Different ssDNA-Binding Capabilities Are Induced by Different Numbers of Bound Nucleotides. Analytical Ultracentrifugation and Dynamic Light Scattering Studies

Agnieszka Marcinowicz, Maria J. Jezewska, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.62 MB

english, 2008

2

Light-scattering spectroscopic study of polysaccharide protein conjugate

A. Patkowski, W. Bujalowski, B. Chu, R. Schneerson, J. B. Robbins

Journal:

Year:

1982

Language:

english

File:

PDF, 805 KB

english, 1982

3

On the cooperative binding of large ligands to a one-dimensional homogeneous lattice: The generalized three-state lattice model

Wlodzimierz Bujalowski, Timothy M. Lohman, Charles F. Anderson

Journal:

Year:

1989

Language:

english

File:

PDF, 461 KB

english, 1989

4

Contributions to selective binding of aromatic amino acid residues to tRNAPhe

W. Bujalowski, D. Porschke

Journal:

Biophysical Chemistry

Year:

1988

Language:

english

File:

PDF, 601 KB

english, 1988

5

The primary DNA-binding subsite of the rat pol β. Energetics of interactions of the 8-kDa domain of the enzyme with the ssDNA

Maria J. Jezewska, Michal R. Szymanski, Wlodzimierz Bujalowski

Journal:

Biophysical Chemistry

Year:

2011

Language:

english

File:

PDF, 1.57 MB

english, 2011

6

Interactions of the DNA polymerase X from African Swine Fever Virus with the ssDNA. Properties of the total DNA-binding site and the strong DNA-binding subsite

Maria J. Jezewska, Michal R. Szymanski, Wlodzimierz Bujalowski

Journal:

Biophysical Chemistry

Year:

2011

Language:

english

File:

PDF, 907 KB

english, 2011

7

Kinetic mechanism of the ssDNA recognition by the polymerase X from African Swine Fever Virus. Dynamics and energetics of intermediate formations

Maria J. Jezewska, Michal R. Szymanski, Wlodzimierz Bujalowski

Journal:

Biophysical Chemistry

Year:

2011

Language:

english

File:

PDF, 1.29 MB

english, 2011

8

Quantitative analysis of ligand-macromolecule interactions using differential dynamic quenching of the ligand fluorescence to monitor the binding

Maria J. Jezewska, Wlodzimierz Bujalowski

Journal:

Biophysical Chemistry

Year:

1997

Language:

english

File:

PDF, 1.59 MB

english, 1997

9

Rat polymerase β gapped DNA interactions

Maria J. Jezewska, Roberto Galletto, Wlodzimiez Bujalowski

Journal:

Cell Biochemistry and Biophysics

Year:

2003

Language:

english

File:

PDF, 366 KB

english, 2003

10

Kinetics of allosteric conformational transition of a macromolecule prior to ligand binding

Roberto Galletto, Maria J. Jezewska, Wlodzimierz Bujalowski

Journal:

Cell Biochemistry and Biophysics

Year:

2005

Language:

english

File:

PDF, 670 KB

english, 2005

11

The nucleotide-binding site of theEscherichia coliDnaC protein

Roberto Galletto, Maria J. Jezewska, Rodrigo Maillard, Wlodzimierz Bujalowski

Journal:

Cell Biochemistry and Biophysics

Year:

2005

Language:

english

File:

PDF, 391 KB

english, 2005

12

[Methods in Molecular Biology] Spectroscopic Methods of Analysis Volume 875 || Fluorescence Intensity, Anisotropy, and Transient Dynamic Quenching Stopped-Flow Kinetics

Bujalowski, Wlodek M.

Year:

2012

Language:

english

File:

PDF, 621 KB

english, 2012

13

Expanding the physiological role of the hexameric DnaB helicase

Wlodzimierz Bujalowski

Journal:

Trends in Biochemical Sciences

Year:

2003

Language:

english

File:

PDF, 175 KB

english, 2003

14

[Methods in Molecular Biology] Spectroscopic Methods of Analysis Volume 875 || Using Structure–Function Constraints in FRET Studies of Large Macromolecular Complexes

Bujalowski, Wlodek M.

Year:

2012

Language:

english

File:

PDF, 690 KB

english, 2012

15

Thermodynamic and Kinetic Methods of Analyses of Protein−Nucleic Acid Interactions. From Simpler to More Complex Systems

Bujalowski, Wlodzimierz

Journal:

Chemical Reviews

Year:

2006

Language:

english

File:

PDF, 1.14 MB

english, 2006

16

Co-operative Binding of Escherichia coli SSB Tetramers to Single-stranded DNA in the (SSB)35 Binding Mode

Marilyn E. Ferrari, Wlodzimierz Bujalowski, Timothy M. Lohman

Journal:

Journal of Molecular Biology

Year:

1994

File:

PDF, 1.05 MB

1994

17

The HexamericE. coliDnaB Helicase can Exist in Different Quarternary States

Xiong Yu, Maria J. Jezewska, Wlodzimierz Bujalowski, Edward H. Egelman

Journal:

Journal of Molecular Biology

Year:

1996

Language:

english

File:

PDF, 1.63 MB

english, 1996

18

Transition between different binding modes in rat DNA polymerase β-ssDNA complexes

Maria J. Jezewska, Surendran Rajendran, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

1998

Language:

english

File:

PDF, 448 KB

english, 1998

19

Kinetic mechanism of the single-stranded DNA recognition by Escherichia coli replicative helicase DnaB protein. Application of the matrix projection operator technique to analyze stopped-flow kinetics

Wlodzimierz Bujalowski, Maria J. Jezewska

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 404 KB

english, 2000

20

Multiple-step kinetic mechanism of DNA-independent ATP binding and hydrolysis by Escherichia coli replicative helicase DnaB protein: quantitative analysis using the rapid quench-flow method

Surendran Rajendran, Maria J. Jezewska, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2000

Language:

english

File:

PDF, 445 KB

english, 2000

21

Recognition of template-primer and gapped DNA substrates by the human DNA polymerase β

Surendran Rajendran, Maria J. Jezewska, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 488 KB

english, 2001

22

Kinetic mechanisms of rat polymerase β-ssDNA interactions. quantitative fluorescence stopped-flow analysis of the formation of the (pol β)16 and (pol β)5 ssDNA binding mode

Maria J. Jezewska, Surendran Rajendran, Roberto Galletto, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2001

Language:

english

File:

PDF, 452 KB

english, 2001

23

Interactions of the E. coli Single Strand Binding (SSB) protein with ss nucleic acids. Binding mode transitions and equilibrium binding studies

Timothy M. Lohman, Wlodzimierz Bujalowski, Leslie B. Overman, Tai-Fen Wei

Journal:

Biochemical Pharmacology

Year:

1988

Language:

english

File:

PDF, 197 KB

english, 1988

24

E. coli DNA associated with isolated Hfq interacts with Hfq's distal surface and C-terminal domain

Taylor B. Updegrove, John J. Correia, Roberto Galletto, Wlodzimierz Bujalowski, Roger M. Wartell

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Year:

2010

Language:

english

File:

PDF, 887 KB

english, 2010

25

Unzipping Mechanism of the Double-stranded DNA Unwinding by a Hexameric Helicase: The Effect of the 3′ Arm and the Stability of the dsDNA on the Unwinding Activity of the Escherichia coli DnaB Helicase

Roberto Galletto, Maria J. Jezewska, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 423 KB

english, 2004

26

Interactions of the RepA Helicase Hexamer of Plasmid RSF1010 with the ssDNA. Quantitative Analysis of Stoichiometries, Intrinsic Affinities, Cooperativities, and Heterogeneity of the Total ssDNA-binding Site

Maria J. Jezewska, Roberto Galletto, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 693 KB

english, 2004

27

DNA Polymerase X From African Swine Fever Virus: Quantitative Analysis of the Enzyme–ssDNA Interactions and the Functional Structure of the Complex

Maria J. Jezewska, Agnieszka Marcinowicz, Aaron L. Lucius, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 540 KB

english, 2006

28

Interactions of the DNA Polymerase X of African Swine Fever Virus with Double-stranded DNA. Functional Structure of the Complex

Maria J. Jezewska, Paul J. Bujalowski, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.24 MB

english, 2007

29

Dynamics of the ssDNA Recognition by the RepA Hexameric Helicase of Plasmid RSF1010: Analyses Using Fluorescence Stopped-Flow Intensity and Anisotropy Methods

Iraida E. Andreeva, Michal R. Szymanski, Maria J. Jezewska, Roberto Galletto, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 865 KB

english, 2009

30

Interactions of the Escherichia coli Primosomal PriB Protein with the Single-stranded DNA. Stoichiometries, Intrinsic Affinities, Cooperativities, and Base Specificities

Michal R. Szymanski, Maria J. Jezewska, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.45 MB

english, 2010

31

The Escherichia coli PriA Helicase–Double-Stranded DNA Complex: Location of the Strong DNA-Binding Subsite on the Helicase Domain of the Protein and the Affinity Control by the Two Nucleotide-Binding Sites of the Enzyme

Michal R. Szymanski, Maria J. Jezewska, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.25 MB

english, 2010

32

Binding of Two PriA–PriB Complexes to the Primosome Assembly Site Initiates Primosome Formation

Michal R. Szymanski, Maria J. Jezewska, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.47 MB

english, 2011

33

Flexibility of the Rings: Structural Asymmetry in the DnaB Hexameric Helicase

Shixin Yang, Xiong Yu, Margaret S VanLoock, Maria J Jezewska, Wlodzimierz Bujalowski, Edward H Egelman

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 835 KB

english, 2002

34

Interactions of the Escherichia coli DnaB Helicase Hexamer with the Replication Factor the DnaC Protein. Effect of Nucleotide Cofactors and the ssDNA on Protein–Protein Interactions and the Topology of the Complex

Roberto Galletto, Maria J. Jezewska, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 837 KB

english, 2003

35

Unzipping Mechanism of the Double-stranded DNA Unwinding by a Hexameric Helicase: Quantitative Analysis of the Rate of the dsDNA Unwinding, Processivity and Kinetic Step-size of the Escherichia coli DnaB Helicase Using Rapid Quench-flow Method

Roberto Galletto, Maria J. Jezewska, Wlodzimierz Bujalowski

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 510 KB

english, 2004

36

Monomers of the Escherichia coli SSB-1 mutant protein bind single-stranded DNA

Wlodzimierz Bujalowski, Timothy M. Lohman

Journal:

Journal of Molecular Biology

Year:

1991

Language:

english

File:

PDF, 1.52 MB

english, 1991

37

Specificity of E.coli SSB Protein Binding To the Chi Subunit of DNA Pol III He and Pria Helicase in the Presence and Absence of ssDNA

Kozlov, Alexander G., Bujalowski, Wlodzimierz, Lohman, Timothy M.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 48 KB

english, 2010

38

The Escherichia Coli PriA Helicase Specifically Recognizes Gapped DNA Substrates

Szymanski, Michal R., Jezewska, Maria J., Bujalowski, Wlodek

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 38 KB

english, 2011

39

Interactions of the DNA Polymerase X From African Swine Fever Virus with the ssDNA. Properties of the Total DNA-Binding Site and the Strong DNA-Binding Subsite

Jezewska, Maria J., Szymanski, Michal R., Bujalowski, Paul J., Bujalowski, Wlodek M.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 36 KB

english, 2012

40

Direct Quantification of the Effects of Osmolytes on Protein Unfolding and Refolding Pathways using AFM Techniques

Bujalowski, Paul, Ma, Liang, Oberhauser, Andres

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 39 KB

english, 2012

41

Tracking UNC-45 Chaperone-Myosin Interaction with a Titin Mechanical Reporter

Kaiser, Christian M., Bujalowski, Paul J., Ma, Liang, Anderson, John, Epstein, Henry F., Oberhauser, Andres F.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 560 KB

english, 2012

42

Interactions of Escherichia coli primary replicative helicase DnaB protein with nucleotide cofactors

Jezewska, M.J., Kim, U.S., Bujalowski, W.

Journal:

Biophysical Journal

Year:

1996

Language:

english

File:

PDF, 1.16 MB

english, 1996

43

The Escherichia coli Primosomal DnaT Protein Exists in Solution as a Monomer–Trimer Equilibrium System

Szymanski, Michal R., Jezewska, Maria J., Bujalowski, Wlodzimierz

Journal:

Year:

2013

Language:

english

File:

PDF, 579 KB

english, 2013

44

Tracking unfolding and refolding reactions of single proteins using atomic force microscopy methods

Bujalowski, Paul J., Oberhauser, Andres F.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.18 MB

english, 2013

45

[Methods in Molecular Biology] Spectroscopic Methods of Analysis Volume 875 || Fluorescence Methods to Study DNA Translocation and Unwinding Kinetics by Nucleic Acid Motors

Bujalowski, Wlodek M.

Year:

2012

Language:

english

File:

PDF, 862 KB

english, 2012

46

The Escherichia coli PriA Helicase Has Two Nucleotide-Binding Sites Differing Dramatically in Their Affinities for Nucleotide Cofactors. 1. Intrinsic Affinities, Cooperativities, and Base Specificity of Nucleotide Cofactor Binding †

Lucius, Aaron L., Jezewska, Maria J., Bujalowski, Wlodzimierz

Journal:

Year:

2006

Language:

english

File:

PDF, 186 KB

english, 2006

47

[Methods in Molecular Biology] Spectroscopic Methods of Analysis Volume 875 ||

Bujalowski, Wlodek M.

Year:

2012

Language:

english

File:

PDF, 8.63 MB

english, 2012

48

[Methods in Enzymology] Biothermodynamics, Part C Volume 488 || Macromolecular Competition Titration Method

Bujalowski, Wlodzimierz

Year:

2011

Language:

english

File:

PDF, 745 KB

english, 2011

49

Escherichia coli single-strand binding protein forms multiple, distinct complexes with single-stranded DNA

Bujalowski, Wlodzimierz, Lohman, Timothy M.

Journal:

Year:

1986

Language:

english

File:

PDF, 455 KB

english, 1986

50

Myosin UNC-45 Chaperone: The Role of its Domains in the Interaction with the Myosin Motor Domain

Bujalowski, Paul, Nicholls, Paul, Barral, Jose, Oberhauser, Andres

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 54 KB

english, 2014

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